The moment you bite into a Starbucks Pumpkin Cream Cheese Muffin, you’re greeted with a warm, spiced aroma that perfectly captures the essence of fall. These moist, tender muffins balance the earthy sweetness of pumpkin with a decadent cream cheese filling that melts in your mouth. While Starbucks only offers these seasonal treasures for a limited time each year, this homemade version of Starbucks Pumpkin Cream Cheese Muffins lets you enjoy this autumn favorite whenever cravings strike. You’ll learn how to recreate these iconic muffins with their signature cream cheese filling and crunchy pepita topping right in your own kitchen.
Why You’ll Love This Recipe
These Starbucks Pumpkin Cream Cheese Muffins are truly the perfect fall treat that will fill your home with the comforting scent of pumpkin spice. The contrast between the soft, moist pumpkin muffin and the creamy, tangy cream cheese center creates a delightful textural experience that’s impossible to resist.
What makes these copycat pumpkin cream cheese muffins special is their authenticity – they taste remarkably similar to the coffee shop version but at a fraction of the cost. The muffin base is incredibly tender thanks to the pumpkin puree, while the warming spices (cinnamon, nutmeg, cloves, and ginger) create that quintessential fall flavor profile we all crave.
Best of all, despite their bakery-quality appearance, these muffins are surprisingly easy to make with simple pantry ingredients. The pepita (pumpkin seed) topping adds a professional finishing touch and a satisfying crunch that elevates these muffins from good to exceptional.
Ingredients
For the Cream Cheese Filling:
- 8 oz (226g) cream cheese, softened at room temperature
- 1/3 cup (67g) granulated sugar
- 1 teaspoon vanilla extract
- 1 tablespoon all-purpose flour
For the Pumpkin Muffins:
- 2 cups (240g) all-purpose flour
- 1 teaspoon baking soda
- 1/2 teaspoon baking powder
- 1 1/2 teaspoons ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon ground cloves
- 1/2 teaspoon ground ginger
- 1/2 teaspoon salt
- 1 cup (200g) granulated sugar
- 1/2 cup (100g) brown sugar, packed
- 3/4 cup (170g) unsalted butter, melted
- 3 large eggs, room temperature
- 1 cup (240g) pumpkin puree (not pumpkin pie filling)
- 1 teaspoon vanilla extract
For the Topping:
- 1/4 cup (30g) pepitas (pumpkin seeds)
The key to authentic pumpkin cream cheese muffins is using pure pumpkin puree, not pumpkin pie filling, which contains added sugars and spices. Full-fat cream cheese produces the most luscious filling, while the combination of warm spices creates that signature Starbucks flavor profile.
Pro Tips
Creating bakery-quality Starbucks Pumpkin Cream Cheese Muffins at home comes down to a few critical techniques:
First, for the perfect cream cheese filling, chill it before use. After mixing your cream cheese filling ingredients until smooth, place the mixture in the refrigerator for at least 30 minutes. This makes it easier to scoop and helps it maintain its distinct layer within the muffin rather than melting completely into the batter.
Second, don’t overmix the muffin batter. Once you add the dry ingredients to the wet, stir just until combined. Overmixing develops too much gluten, resulting in tough, dense muffins instead of light, tender ones. A few small lumps in your batter are actually preferable for the best texture.
Finally, use the two-temperature baking method. Start baking at a higher temperature (400°F/205°C) for the first 5 minutes, then reduce to 350°F (175°C) for the remaining baking time. This initial high heat helps the muffins rise properly, creating those beautiful domed tops that are characteristic of professional bakery muffins.

Instructions
Step 1: Prepare the Cream Cheese Filling
Beat the softened cream cheese, granulated sugar, and vanilla extract in a medium bowl using an electric mixer until smooth and creamy, about 2 minutes. Add the tablespoon of flour and mix until incorporated. Transfer the mixture to a small bowl, cover with plastic wrap, and refrigerate while you prepare the muffin batter.
Step 2: Prepare the Muffin Batter
Preheat your oven to 400°F (205°C) and line a 12-cup muffin tin with paper liners. In a medium bowl, whisk together the flour, baking soda, baking powder, cinnamon, nutmeg, cloves, ginger, and salt.
Step 3: Mix Wet Ingredients
In a large bowl, combine the granulated sugar, brown sugar, and melted butter. Whisk until well combined. Add the eggs one at a time, beating well after each addition. Stir in the pumpkin puree and vanilla extract until the mixture is smooth and uniform.
Step 4: Combine Wet and Dry Ingredients
Gradually add the dry ingredients to the wet ingredients, folding gently with a spatula until just combined. Remember, a few small lumps are perfectly fine! Overmixing is the enemy of tender muffins.
Step 5: Fill the Muffin Cups
Fill each muffin cup about 1/3 full with batter. Place a tablespoon of the chilled cream cheese mixture in the center of each cup. Top with the remaining batter, covering the cream cheese completely. Each cup should be about 3/4 full.
Step 6: Add the Topping and Bake
Sprinkle pepitas over the top of each muffin. Bake at 400°F (205°C) for 5 minutes, then reduce the temperature to 350°F (175°C) without opening the oven door. Continue baking for 15-18 minutes, until a toothpick inserted into the muffin (not the cream cheese center) comes out clean.
Step 7: Cool and Enjoy
Allow the muffins to cool in the pan for 5 minutes, then transfer to a wire rack to cool completely. These pumpkin cream cheese muffins are best enjoyed at room temperature when the flavors have had time to meld together.
Variations
Gluten-Free Pumpkin Cream Cheese Muffins: Substitute the all-purpose flour with a 1:1 gluten-free baking blend. Add 1/4 teaspoon xanthan gum if your blend doesn’t already contain it to help with the structure. The result is nearly identical to the original, though slightly more delicate in texture.
Vegan Pumpkin Spice Muffins: Replace the eggs with flax eggs (1 tablespoon ground flaxseed mixed with 3 tablespoons water per egg), use vegan butter, and swap the cream cheese filling for a vegan cream cheese alternative mixed with a bit of powdered sugar. While the texture differs slightly from traditional Starbucks Pumpkin Cream Cheese Muffins, this version still captures the essence of the fall favorite.
Streusel-Topped Version: For an extra indulgent variation, skip the pepitas and instead make a streusel topping with 1/4 cup brown sugar, 1/4 cup flour, 2 tablespoons butter, and 1/2 teaspoon cinnamon. This creates a more dessert-like muffin with a sweet, crumbly top that contrasts beautifully with the tangy cream cheese filling.
Storage and Serving
These homemade Starbucks Pumpkin Cream Cheese Muffins can be stored in an airtight container at room temperature for up to 2 days. For longer storage, refrigerate them for up to 5 days. Due to the cream cheese filling, refrigeration is recommended after the first day to maintain food safety. You can also freeze these muffins for up to 3 months by wrapping them individually in plastic wrap and storing in a freezer bag.
For the best eating experience, serve these muffins slightly warmed. If refrigerated, allow them to come to room temperature for about 30 minutes before enjoying, or microwave for 10-15 seconds for that just-baked warmth. They pair wonderfully with a hot cup of coffee or chai tea.
For a special breakfast or brunch presentation, serve these muffins on a platter with a light dusting of powdered sugar and a sprinkle of additional cinnamon. For dessert, try topping with a small dollop of whipped cream and a drizzle of caramel sauce for an extra decadent treat.
FAQs
Can I use canned pumpkin pie filling instead of pumpkin puree?
No, pumpkin pie filling already contains sweeteners and spices that will alter the flavor of your Starbucks Pumpkin Cream Cheese Muffins. Use pure pumpkin puree for the authentic taste.
Why did my cream cheese sink to the bottom of the muffins?
This typically happens if the cream cheese filling is too warm or thin. Make sure to chill your filling thoroughly before assembling the muffins, and ensure your muffin batter isn’t too thin.
Can I make these muffins ahead of time for a special occasion?
Absolutely! You can prepare the batter and cream cheese filling a day ahead and store them separately in the refrigerator. Alternatively, bake the muffins completely and store them in an airtight container.
How can I tell when the muffins are done baking?
Insert a toothpick into the muffin part (not the cream cheese center). If it comes out clean or with a few moist crumbs, they’re ready. The tops should also spring back when lightly touched.
Can I use homemade pumpkin puree instead of canned?
Yes, but make sure to drain it very well first, as homemade puree often contains more moisture than commercial versions. You might need to reduce the puree to 3/4 cup if it’s particularly wet.
Starbucks Pumpkin Cream Cheese Muffins
- Prep Time: 20 minutes
- Cook Time: 20 minutes
- Total Time: 40 minutes
- Yield: 12 muffins 1x
- Category: Breakfast
- Method: Baking
- Cuisine: Americaine
Description
Starbucks Pumpkin Cream Cheese Muffins with creamy filling, fall spices, and moist pumpkin bread – a comforting crowd-pleaser!
Ingredients
- 8 oz cream cheese, softened at room temperature
- 1/3 cup granulated sugar
- 1 teaspoon vanilla extract
- 1 tablespoon all-purpose flour
- 2 cups all-purpose flour
- 1 teaspoon baking soda
- 1/2 teaspoon baking powder
- 1 1/2 teaspoons ground cinnamon
- 1/2 teaspoon ground nutmeg
- 1/2 teaspoon ground cloves
- 1/2 teaspoon ground ginger
- 1/2 teaspoon salt
- 1 cup granulated sugar
- 1/2 cup brown sugar, packed
- 3/4 cup unsalted butter, melted
- 3 large eggs, room temperature
- 1 cup pumpkin puree (not pumpkin pie filling)
- 1 teaspoon vanilla extract
- 1/4 cup pepitas (pumpkin seeds)
Instructions
- Step 1: Prepare the Cream Cheese Filling Beat the softened cream cheese, granulated sugar, and vanilla extract in a medium bowl using an electric mixer until smooth and creamy, about 2 minutes. Add the tablespoon of flour and mix until incorporated. Transfer the mixture to a small bowl, cover with plastic wrap, and refrigerate while you prepare the muffin batter.
- Step 2: Prepare the Muffin Batter Preheat your oven to 400°F (205°C) and line a 12-cup muffin tin with paper liners. In a medium bowl, whisk together the flour, baking soda, baking powder, cinnamon, nutmeg, cloves, ginger, and salt.
- Step 3: Mix Wet Ingredients In a large bowl, combine the granulated sugar, brown sugar, and melted butter. Whisk until well combined. Add the eggs one at a time, beating well after each addition. Stir in the pumpkin puree and vanilla extract until the mixture is smooth and uniform.
- Step 4: Combine Wet and Dry Ingredients Gradually add the dry ingredients to the wet ingredients, folding gently with a spatula until just combined. Remember, a few small lumps are perfectly fine! Overmixing is the enemy of tender muffins.
- Step 5: Fill the Muffin Cups Fill each muffin cup about 1/3 full with batter. Place a tablespoon of the chilled cream cheese mixture in the center of each cup. Top with the remaining batter, covering the cream cheese completely. Each cup should be about 3/4 full.
- Step 6: Add the Topping and Bake Sprinkle pepitas over the top of each muffin. Bake at 400°F (205°C) for 5 minutes, then reduce the temperature to 350°F (175°C) without opening the oven door. Continue baking for 15-18 minutes, until a toothpick inserted into the muffin (not the cream cheese center) comes out clean.
- Step 7: Cool and Enjoy Allow the muffins to cool in the pan for 5 minutes, then transfer to a wire rack to cool completely. These pumpkin cream cheese muffins are best enjoyed at room temperature when the flavors have had time to meld together.
Notes
Fresh ingredients will always yield the best flavor results.
Nutrition
- Serving Size: 1 muffin
- Calories: 320
- Sugar: 24g
- Sodium: 200mg
- Fat: 16g
- Saturated Fat: 9g
- Unsaturated Fat: 5g
- Trans Fat: 0g
- Carbohydrates: 40g
- Fiber: 1g
- Protein: 4g
- Cholesterol: 80mg